NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208852_1000467

Scaffold Ga0208852_1000467


Overview

Basic Information
Taxon OID3300020560 Open in IMG/M
Scaffold IDGa0208852_1000467 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11236
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010237Metagenome306N
F011919Metagenome285N
F013410Metagenome271Y
F013988Metagenome266Y
F021105Metagenome220Y
F023058Metagenome211N
F027779Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0208852_10004671F021105AGGMRNPNEEYDRLHDHMTAIARERDNANRIITTLEKQIEELQDEISLAHEALRRAFPENQA
Ga0208852_100046711F023058N/AMAGVAVVGSGLYDLEIDTGYNWNAFTLDDDPKGTLDSTDYVLDGTDQYASVMDGTIGLTAKRGRANTGDQFPYGTMSFTLNDTYADGVFNPFDTTSPYYDPNNSLPGLAPLRKVRFSRYDSLGVKKYLWVGYIVNFDYTFTLGGLDTVSVTCADFSYQLGQTFLAEWNVTEQLSSDRFDDLLDRPEVDYVGTRSIETGVATLGGAAAWTVANGTSVAGYANKIMEAEQGRIFVDREGTITFQKRIGQVLGVPVAEFHDTNPPTKIGYSAIDIAFQADTVVNRASVAHAGASSPQVAEDLTSQATYLIQTTSITDSLVHNDAAALTLAEYLLNANPEARFNSIGTEFPGTPALDQDTLALLDVGSVINIEKSITTSEGPTQFAQNLTVEGLEHRLTLSAGHAVTYFTAPTTIVYELILNDAVYGTLDEDNVLG
Ga0208852_100046716F010237AGGMPVPNYTDLFNEGYDDLVAKLSTVSGLQVNNDPRNITPPSVFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSTLPAYELSVTTVVQT
Ga0208852_100046717F013988GAGMAVYSVTQKYLIDNYAVVQLLTDAEIELGASVVLAGVDATFNGTYTVRALPQYLYVGIDTEGDLLYDVNIPIANQVLVAKTADDVARTAASGTLTITQVCTWVTAANLEDWIGIGTATAADAAFLTVCASAASQFCWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA
Ga0208852_10004673F011919N/AMQESEANQMNDLQLFAPSSGLGAYREDIAIDRNTVIISPSAKPTSASAALNALPKSGSKRRRVYEYLKQSGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR
Ga0208852_10004674F013410AGGAGMYPENYSDKYNKVFKEFVDDIMKPPRHPVDRLEDHSILLDELTLMYDAHMTIGGEQNRFNASVIRAAINVILTCTK
Ga0208852_10004677F027779N/AMSVIPANPKIVGSKPYTGNSDGAAAGPRSGTDEWIRQAVKYSNGAIWNNGSWGVRDMKGTPGSLSVHATGRAWDASYRKTDKYPTANRKGAVAFLNIVIANANALGLECVLDYFPQKFGRGWQCTRQAWSNYSKPTIHGAPGGDWHHYEISPAMADSPALVKQAFQRVFGEIPQ

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