Basic Information | |
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Taxon OID | 3300020560 Open in IMG/M |
Scaffold ID | Ga0208852_1000467 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11236 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (78.95%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010237 | Metagenome | 306 | N |
F011919 | Metagenome | 285 | N |
F013410 | Metagenome | 271 | Y |
F013988 | Metagenome | 266 | Y |
F021105 | Metagenome | 220 | Y |
F023058 | Metagenome | 211 | N |
F027779 | Metagenome | 193 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208852_10004671 | F021105 | AGG | MRNPNEEYDRLHDHMTAIARERDNANRIITTLEKQIEELQDEISLAHEALRRAFPENQA |
Ga0208852_100046711 | F023058 | N/A | MAGVAVVGSGLYDLEIDTGYNWNAFTLDDDPKGTLDSTDYVLDGTDQYASVMDGTIGLTAKRGRANTGDQFPYGTMSFTLNDTYADGVFNPFDTTSPYYDPNNSLPGLAPLRKVRFSRYDSLGVKKYLWVGYIVNFDYTFTLGGLDTVSVTCADFSYQLGQTFLAEWNVTEQLSSDRFDDLLDRPEVDYVGTRSIETGVATLGGAAAWTVANGTSVAGYANKIMEAEQGRIFVDREGTITFQKRIGQVLGVPVAEFHDTNPPTKIGYSAIDIAFQADTVVNRASVAHAGASSPQVAEDLTSQATYLIQTTSITDSLVHNDAAALTLAEYLLNANPEARFNSIGTEFPGTPALDQDTLALLDVGSVINIEKSITTSEGPTQFAQNLTVEGLEHRLTLSAGHAVTYFTAPTTIVYELILNDAVYGTLDEDNVLG |
Ga0208852_100046716 | F010237 | AGG | MPVPNYTDLFNEGYDDLVAKLSTVSGLQVNNDPRNITPPSVFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSTLPAYELSVTTVVQT |
Ga0208852_100046717 | F013988 | GAG | MAVYSVTQKYLIDNYAVVQLLTDAEIELGASVVLAGVDATFNGTYTVRALPQYLYVGIDTEGDLLYDVNIPIANQVLVAKTADDVARTAASGTLTITQVCTWVTAANLEDWIGIGTATAADAAFLTVCASAASQFCWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA |
Ga0208852_10004673 | F011919 | N/A | MQESEANQMNDLQLFAPSSGLGAYREDIAIDRNTVIISPSAKPTSASAALNALPKSGSKRRRVYEYLKQSGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR |
Ga0208852_10004674 | F013410 | AGGAG | MYPENYSDKYNKVFKEFVDDIMKPPRHPVDRLEDHSILLDELTLMYDAHMTIGGEQNRFNASVIRAAINVILTCTK |
Ga0208852_10004677 | F027779 | N/A | MSVIPANPKIVGSKPYTGNSDGAAAGPRSGTDEWIRQAVKYSNGAIWNNGSWGVRDMKGTPGSLSVHATGRAWDASYRKTDKYPTANRKGAVAFLNIVIANANALGLECVLDYFPQKFGRGWQCTRQAWSNYSKPTIHGAPGGDWHHYEISPAMADSPALVKQAFQRVFGEIPQ |
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