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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020560 Open in IMG/M |
| Scaffold ID | Ga0208852_1000171 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17889 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022586 | Metagenome / Metatranscriptome | 213 | N |
| F042162 | Metagenome / Metatranscriptome | 158 | N |
| F063335 | Metagenome / Metatranscriptome | 129 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208852_100017110 | F063335 | GAG | MERQKLEELQKVRKERLALERAVMQICSSSLHPERLGLTLIKNYHLIEAINKLVRKEKALAAETKVETREHEENK |
| Ga0208852_10001718 | F022586 | AGG | MEDMENKLSISPNSFYEIIHEDGDLISYEQEKLDKLLDSIILKIKPTPELEEEIVENIQKAIEVTEDIISTIDRFIEDATLAENNLFTGFHEDHQKDAKSSAVKTLDIAVNLRENNFLSVVPVIRNLTTRIEWIELILSKTSIEQMKNTSENRKTALK |
| Ga0208852_10001719 | F042162 | N/A | MSRQTPESKIKEQVENKVNPILKEKYQEGIAIKLFKSSSEVIRDSIDEVTKSYYINYPREIKEDFIKEVSTQVLEWKNKIQERSKSKDITGLDQLLSRKIVDILKEYLRALKEADIDKRQHELYQVDALASITYYAKIEDLIKSPFSLELCKKNNWIIEIPKSN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |