NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208083_1062355

Scaffold Ga0208083_1062355


Overview

Basic Information
Taxon OID3300020559 Open in IMG/M
Scaffold IDGa0208083_1062355 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07JUL2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)594
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012213Metagenome / Metatranscriptome282Y
F021291Metagenome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0208083_10623551F012213N/AIHQIKTFDKKILVELKVIDHGTEFYTSNELSVLKQKIMDANREHGLQFENDFSSLNGIKEETINDKFTEISERWGLTYEKF
Ga0208083_10623552F021291N/AMGINLRKVLTMKELSNRHKNALKNTFPDLEIQKEVEPQTQLEELNDYLRLLADMDNIGIRRKLFLLEGYVNKVISQLKNK

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