Scaffold Ga0208083_1002018

Overview

Basic Information

• Taxon OID: 3300020559
• Scaffold ID: Ga0208083_1002018
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07JUL2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4919
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097222	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208083_10020186	F097222	GAG	MNRERELKYAAQSSEPPPLPHGWSLGPERTIAEIVDTYLDHAATLITRGWALRRRETVGAPTRYTLKRNAQQVGAFHQRDEIEREGDQIPAEIVHEIGAQLASELHEIVTMRQRRRSWPLQLNGSVVADLTTDVIQSGSAQWTELEVEFVPSVSDADATEMATDLQAFFAGDGTLTPSRQSKLETAIAAL