Scaffold Ga0208486

Basic Information
Taxon OID	3300020556 Open in IMG/M
Scaffold ID	Ga0208486_1002048 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020556 Open in IMG/M

Scaffold ID

Ga0208486_1002048 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3632
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3632

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F080034	Metagenome / Metatranscriptome	115	N
F101173	Metagenome / Metatranscriptome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208486_10020481	F080034	N/A	MEEIKAPKKERKFLKAVGNIAKVLANELIMGIGRKFIGKAINKVGNKRQGLVIAFLLVAGISYASIDSIPYPITGNKQRLGFQTTGNGLVWRGLVSDTVTKPTSYADKNVKAYLVLDSVTGSIY
Ga0208486_10020483	F101173	AGCAG	MAVRFETTVYNEKGRKINVAIKDNVFSGMTYSFDTISLSLQYDSESQQGQERFTPIIGSSCNLSLLINNNDLETLLLDIGLAVEGRFTMHLTAYEDDNITVSFNWYGYIVTDLVQFEDIPLSIGYVAQISAIDGLGWLKTLDYKSAVGPYNGQDTVVQHILNCLNQLDFVQSELVANSLPVLHTVFDWNENTTVYSADNDYALLTVIQHRAFYHKDTKNNYIYQSCYDVLKKICQTFGARLIFSGNQYWFIQVNEYARNPAAHRYFKYSALGVQASGTFTFDFTMSNIQTNLPGSDLMRLSGGKWTYYPALKNVVVRYNHFAKQNLLAGVEYNYATNTTPITTITPTLDATNADARLSYTGILGFYAQALNPVNFEPFQFVFAVKVASIINSFPLQGFADANWTLGSGWFINNGILEGTIIATVAYYTTFTVTSGRKYYVKIKVDIENSGSLRLRLGGVTKTITESGDYDYVILSTNTDTLQLDSLSSPGFTGKIKSLQVKQENKYLKRNVTYTNGFNFILEAASWEDTFYEYEFNTETITADAAFVAYKTITFDTLDIPESAEYIWEMRLKNMRNEAGTNVSGNFSISYLLSSNYLEFLPTGAVSGQSDILEYGSDNDDKSSTIFSLDTYIGDGPSKTTDGGLKVLESGTYENSSSWDVSSGSGFNNVTQLLVNEVIRGQLTPKLRMVDMPFQNLSVDNPYLPHKVIEYSSGYYVFERGSFDLKTEIWQGDYFKIELDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208486_1002048

Overview

Ecosystem & Geography

Associated Families

Sequences