Scaffold Ga0208360_1005337

Overview

Basic Information

• Taxon OID: 3300020551
• Scaffold ID: Ga0208360_1005337
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1997
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F024095	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208360_10053372	F014837	GAGG	MIQRNINPKPRFVTLTASVPSTGAFVGAPLATLFRASFFRFPQDSIIHYVSINSTFLANGAFSQVIGAIAYGQGQDNIGFNLGAGLDNTADEVIWRDELLNPVAGVVTADKSTQIMMNEYFVHTGTGIGIYVNGSNGNANINATIAFNPIAEWVNFREPTTAARI
Ga0208360_10053373	F024095	GGCGG	MDNTNSLPFVYVVTASLGAAVGATVSTTLIMQADSRFELMGIMGTGGTAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAATNSITLALHGYKIIL
Ga0208360_10053374	F016141	N/A	THMTPEIIDSLQKRFGSADFSRYQVVRGQKYDFVRLTATGTNSVSFYSNPIGAADPGAGSPPLFKTLEQTNLVKNASFGQEYFALTQIRTYAGFVCQSRQPSGLGTNVVYRGFTAKTDSAMEKLQTLLNTGVLEISFAQKLYYQIARPFIQCPPGFGIDIQSLASSRDGNAAETQACDTNWWARPDYRATAVYNIDPIQIVEPEIQIQAAINFPNGNTPDFTNTGLTTASGNFTPNIELGLVFDGYVIRPSQ