NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208600_1053616

Scaffold Ga0208600_1053616


Overview

Basic Information
Taxon OID3300020550 Open in IMG/M
Scaffold IDGa0208600_1053616 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)600
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048168Metagenome / Metatranscriptome148Y
F058806Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0208600_10536161F048168N/ATSAAPATIVNATQLRVTLTINNDVVIDDVVAHELGASVATGVTTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0208600_10536162F058806N/AMSWQIPTQVEQDIIAGKAKYQTFQTGNGGQSILPVPPNSYVVIFGYDFSPAGGGFKRLSQYDAGGTALLNNDEVVRWFETQQISFYTGTD

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