Scaffold Ga0207942_1042939

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207942_1042939

Scaffold Ga0207942_1042939

Overview

Basic Information
Taxon OID	3300020549 Open in IMG/M
Scaffold ID	Ga0207942_1042939 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	560
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085363	Metagenome	111	Y
F106065	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207942_10429391	F085363	N/A	APKAPKTVYNVNVEYVEAIADESIATIMALRALVRKLATELQEARK
Ga0207942_10429393	F106065	GGAGG	MSTIIPDLVVGSVGFGSNFADNTASLESQVRELIRSNNRLIRVINRCVKPSNEVANEAHDAIEEATAIR

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