Scaffold Ga0207942_1025163

Overview

Basic Information

• Taxon OID: 3300020549
• Scaffold ID: Ga0207942_1025163
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 754
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F038208	Metagenome	166	Y
F091314	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207942_10251631	F091314	N/A	ADETGWAVNGVPMCSHGSMRWNQSKPDAPKAWAGYFCSEKIKEKQCKPQWYVLTSDGTFKPQV
Ga0207942_10251632	F000403	N/A	LDIGKMSDYIEIIHPQSMTAKLLCNGVLVEEYKIEQCDKCSQLRRLDQFGYQKGYDRTENIIWFCGDCR
Ga0207942_10251633	F038208	AGGAGG	MIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYDYQPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDR