Scaffold Ga0208856_1001248

Overview

Basic Information

• Taxon OID: 3300020548
• Scaffold ID: Ga0208856_1001248
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7992
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Elemovirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040698	Metagenome	161	N
F061533	Metagenome	131	N
F075040	Metagenome	119	Y
F089880	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208856_100124810	F040698	N/A	MNKTPELNSETLGRGRRKKWDMDRIEQLFMGGAEMSDILKLPEFSKMSRFYLKNCMVKGKWIDKRKKLRESVANIVAPKMEDLMAAETSAHYQFMLKQIAEERAQVEGRYKTGNIKDQSARLDVLAQYEKMATRALGLDENNMHDRKGLSVNAMISLHVEGPRKAVEGEIVSAEYVKVETHGEKVEESETEGEPE
Ga0208856_10012482	F075040	N/A	MKDTPKVKTESVEKPVVQNSDLKREIYLRLISSAAADGRFLLGNLPNANAVVKQGDHLRGVAELLTSCYEK
Ga0208856_10012485	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFTGPKGEFVIQGGDIEIDGNTYGLKFFNNTQEQSIKGNVITLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKIEFDQPSEEPVRRSEPTKVAIVTDNPEKAIDEIVELHRYINSLVRHTYKDVEDEETLRSYVSSVFIEANRKGIRYSKHKVEEPKVVEVKQEEPKDEFNPEDWASAIVPSGSQKGKKLAAIGKPALTKLYEYYLEKGFTTPFAKCVEKAAEDLNLDAPTEEVDDIPY
Ga0208856_10012486	F089880	N/A	MKKKELELFSPTQEGVLVPLSTYLRHMGEFVKDEWPGINITETHIKKAWSKLLKNEYLDDDAPDEMLEMYERMSADWDMAKEMEEERQNVDDYKPEPIVATPEPENESAALVESVRNGLELSSFTQKFDIGNGMTQCVPKGKVEMKDWVAAFAFGLTLESGAQWIIGDSVVALENGGHEDVVNQLCSNFKKSYSTVSGYARACRAFPADKRDPILPFTVYREIGNANFGDDKTNKKKQDELLEAAKTEKLSSTEVRNRVRHEQGKDDKPISHRYLILNVTNFSNSEIVRNMPEEVQEHQLLIDLGDKSWFDPAEGEWMRFLKEQ