Scaffold Ga0208361_1011856

Overview

Basic Information

• Taxon OID: 3300020547
• Scaffold ID: Ga0208361_1011856
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1285
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015585	Metagenome / Metatranscriptome	253	N
F016361	Metagenome / Metatranscriptome	247	Y
F049579	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_10118561	F016361	N/A	MCKKRELTEEPLINRVRQPINERLIQTLLQKQLALMALMDTMTVTMDTEKGKTVFREIVSTMKELENMNATCTCGLN
Ga0208361_10118562	F015585	N/A	MTKIRLHLYSKRLCIKYRFVKLKEVKMSPKNTERNQRLIKVINHCSRVAESKEVRELQLSPQLGELIKNLAGKGKEWSFILITYPKKNLEVQGKPPSEVKAEPGLSEEEKFYSSPW
Ga0208361_10118563	F049579	N/A	PIEAEKEEPPLINSLPGGVDYTKLTRCQLIDTILGHRAELTEQFIFLINALAHGEYDDQYSIWKDEILDVVYQLIRIDTNWRLKVVTKDCGHIIIRHEECTCDEPFHYKTKIERRRVSRPRKRVLPTIPQLIEKRDSNVRDLLFMINESVVDYDYPRDNITWVMELRRIIQRILDIDPSWKLECIRVPAQCMKIKREQCNC