Scaffold Ga0208361_1000970

Overview

Basic Information

• Taxon OID: 3300020547
• Scaffold ID: Ga0208361_1000970
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6270
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F010026	Metagenome / Metatranscriptome	309	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_100097010	F003661	AGG	MDPTTAAVVAIAIAAGSEIIALLPIRENSWVQLVLKVLKMIFPKR
Ga0208361_100097011	F002317	N/A	MDGHEEGHVSPSGPNAFSQAVPALLAAAVLGLGGLFIQVAKLDQSVSTVAQDIQELKNDSKERLADLEGRVRQIEMTIGRDK
Ga0208361_100097013	F010026	GAG	MAVKSKTGTARVQHVPGKPKKTRQGQGQHSLPNHGRKKMRGQGKG