Scaffold Ga0208361_1000471

Overview

Basic Information

• Taxon OID: 3300020547
• Scaffold ID: Ga0208361_1000471
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11119
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (31.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038601	Metagenome / Metatranscriptome	165	Y
F045713	Metagenome / Metatranscriptome	152	Y
F104787	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208361_100047115	F045713	N/A	MNGRIWEGSCTYLKCADGMIEGRFIFPTPNNPEILGALMGRLAEGVEVITCTDDGEDGD
Ga0208361_10004714	F104787	N/A	MRLAFDLTEVRRLLRRGIDAKHWTLQDLDSPSPGWLITMEDAKRIAGFTPPVYQNLLRDEPTPTERVEIVSPRDFAVAETLADPVQRGSTPVLPRTDGHMVEPFSDAGLQGPERCVGDEADYGDQAYLGTSGEDGTQGVGGFSDDW
Ga0208361_10004715	F038601	N/A	MKLYSPDARGKYVWQVADAKTRAVSYTVTTSRTPPPDACYGHPMGKYDDTGLYLTFCPNVGADDPKSPQAARYVLHPMAAAERDRADRERLWREI