Scaffold Ga0207937_1018999

Overview

Basic Information

• Taxon OID: 3300020544
• Scaffold ID: Ga0207937_1018999
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1176
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043476	Metagenome	156	N
F090574	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207937_10189993	F043476	AGGAGG	MLTLPTNIDRAEIEAFVNHVTAEVMDGNVDPLSVHIRCKAVVKALESIIERTEELAKDTAATYGKGEFKFHGASVQLREPRDMPDFNHDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR
Ga0207937_10189994	F090574	N/A	MSLEERVEAMVSLSHNNMQLGKVVTLVGQLFQNVSPEVSARLYPVWAEAYRSALQDMQNAYNLGVTEERTKCVAMMSKPNQPNP