Scaffold Ga0207937_1000662

Overview

Basic Information

• Taxon OID: 3300020544
• Scaffold ID: Ga0207937_1000662
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11844
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026810	Metagenome / Metatranscriptome	196	N
F030412	Metagenome / Metatranscriptome	185	N
F032144	Metagenome / Metatranscriptome	180	N
F033695	Metagenome / Metatranscriptome	176	N
F058942	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207937_10006621	F030412	N/A	MNRPCSKCDKTLFSCEKSAIGFNQPKGEQLTPIGLWNRRDNLVRELIESLNLMTITVSRTIGTELQEHLIMRDLIKKIREIDDEWHLVVAQQGDNCLRIMHYDCNCNYNYHSDCRSRKDLHQNEKSAKN
Ga0207937_100066215	F032144	N/A	MDASCPQMNIHEVLFYSFINKECPTFMADKLVMLFRVAMMVFRNGNVSYNAVMICNTLMVDFFCRNHRILARGLGLEFIDNVLFRLIRNEGFWHFLNAGNVHLFYLDYRTKMMNLICHQLAKMYGHEHFHNIFRNLSPGMRGRQDLGKVFL
Ga0207937_10006623	F058942	N/A	MNKSSSIEENNKVVQYLTEKIESLELIENFYNKVQDLLGQGVDIKFPPDLDFNYHRELIKIRKQDISFARWTFQLQVIRLLSGRPIPIKRLQWTG
Ga0207937_10006624	F026810	GAG	MTNEEHVDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSTEFEKIKEKVNDPVLVNKLGVVTNQALVLNPSQIEQSQNSVLDLSLPRQ
Ga0207937_10006625	F033695	N/A	MEGFNQEFKLAMEEVQELTRRSAMYSSRGNNGPTKVDIKAVQYYRIEVNKRIDYIQEMMEVFPFRTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLDSYVKVLEKFKNETDYSYWKDYISIHENKILEGS