Basic Information | |
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Taxon OID | 3300020543 Open in IMG/M |
Scaffold ID | Ga0208089_1000459 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10503 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (22.22%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001964 | Metagenome | 610 | Y |
F002227 | Metagenome | 580 | Y |
F005388 | Metagenome / Metatranscriptome | 402 | N |
F010673 | Metagenome | 300 | Y |
F029798 | Metagenome / Metatranscriptome | 187 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208089_100045913 | F010673 | N/A | MNPKLIPILERIIARDTILQSFHADNLPQSALAYVRALYLNDNFLWLTPEEQDLLETLPPFADNISESFREGSGGDASIYHLFDDGSLWIKTNAYQQVWADTRDFAVESILPLMRLDRMDAELLREIGMDDHIDEVRDDFFGAFAHVLHLTCGIAYCDAREHWGAWARQLSDGEREKAELGGAKSGHAEGLRFASEYTVNA |
Ga0208089_100045916 | F002227 | N/A | MKLTIQSRDNAQTIVDLFNAIITGEVEERGATPLSIYDDDRHICSLTDKLGNQILELIIEREAGDKLCPGTPDSETV |
Ga0208089_100045918 | F001964 | GGAGG | MIRNQFTPPKFKVQLVGAIGWSDLKERVVSHRMVEFPTRKEAEKAAKELNPGEYAQGRIRVVPTTWPEDYDVYPVVERVSEKPKSVS |
Ga0208089_10004592 | F029798 | N/A | MATISCAEAANLIAEAQGASCKSPRERNLLEIGLLWEAATLGGTADITADNTVITADSTIITADMTEFL |
Ga0208089_10004596 | F005388 | N/A | MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYSEVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNSSWVTAPFEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHASEPVFTNQGMTIIFRRCTGALTTVICS |
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