Scaffold Ga0208857_1000118

Overview

Basic Information

• Taxon OID: 3300020542
• Scaffold ID: Ga0208857_1000118
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19851
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (32.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011136	Metagenome / Metatranscriptome	294	Y
F027408	Metagenome	194	N
F040621	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208857_100011818	F011136	GAGG	MDRPQEDVQDIVCRGKVEQYVNRALWLSWHSNRSDYAIKYRKYYELHTEKGAEDTKQDETWIGAFIDGEYLYSAIGRMHEFDAILLRLYSKPDFNYKELSATTGIPYPYLRTAIHRALKKIRTYVELQRAAAHSKREAGDL
Ga0208857_100011819	F040621	N/A	MLNFNVPLHIQRERLAICKKCKFFKPLTQSCGTLIVGNTVDPEENSVTHYKEKIKLCGCIMPIKTMFRFASCPAHKWFALDWKQEEIAELNEFIHRIHKANKIEAHDLQQLYKWATKMTGKHEQPSGCASCIRDLINEFRRQLNKIDSK
Ga0208857_10001185	F027408	N/A	MKDYDKQRETELLRKLFVLTAKRSMRPAMSDNMAMRLIFEELLLLTDKDEYRL