Scaffold Ga0208359

Basic Information
Taxon OID	3300020541 Open in IMG/M
Scaffold ID	Ga0208359_1000164 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020541 Open in IMG/M

Scaffold ID

Ga0208359_1000164 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13677
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (26.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13677

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (26.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F014844	Metagenome / Metatranscriptome	259	Y
F024098	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208359_10001641	F014844	N/A	MFIGYGYGYPTNMLQGGVAAGVWALFNARATADGATAAEAAVNGCLFNRFAVIYNF
Ga0208359_100016415	F024098	N/A	YNKMIFKVSGSLTSATNYRYVCDVKNGAGTTTLARLKCDKLPTTNYGFFDVSRVVETLMAPTVPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVSGVLAFAGNLEQLELADWSGGTYFPPAPLTANTGKSLTTTQDGTSVSNAIAVVYADSYGYLCYGKGSANTTNAVRVRYRDASNAVTREFFVQEGAASGSTIVRFGSGPMNLNALTSAQCSDGLAGSASFPIAEGAGYSIEPIDTLNTGLPYYPVYYRLGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELNGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0208359_10001642	F001129	N/A	MLGQGGSMKFVDAAVTGENFDFIVVNTAATFTTLTGTGGENLLTAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0208359_10001643	F000847	AGG	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLVLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATLSFAIPYSHSVCEIPT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208359_1000164

Overview

Ecosystem & Geography

Associated Families

Sequences