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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020541 Open in IMG/M |
| Scaffold ID | Ga0208359_1000008 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 49914 |
| Total Scaffold Genes | 66 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (78.79%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000369 | Metagenome / Metatranscriptome | 1222 | Y |
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F001464 | Metagenome / Metatranscriptome | 689 | Y |
| F002501 | Metagenome / Metatranscriptome | 553 | Y |
| F008245 | Metagenome / Metatranscriptome | 336 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208359_100000828 | F000376 | GGA | MINYQEQARQCLCCTKHVPLPTLLREYEGISLCPTTFANVLEYKRIWESIGSRPTGSIRKHFSEYTQKIVEKSISGVENGK |
| Ga0208359_100000830 | F000369 | AGAAG | MEIELADHFDRMNKVVEELLRGNNPTQIATLTGFKRAEVVGLIDEWKNVVRNDTSARERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLSVKSGALKLIADIEGKRIGMLQEVGLLDNAELAGQIAEAERKQEVLVKILKEVTATCPKCKMEVAKRLSQITGIVEPIEIIEEVSGI |
| Ga0208359_100000836 | F008245 | GAGG | MTEDNNTLQLISSITEFNDLHEFMKDEHLDKALSIVVKLLMNPDVPSAKAPLLIMELQAMSTKFAVMSSFYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS |
| Ga0208359_100000853 | F001464 | GAG | MAREIRKGKRKKLSYFFLNNKIHKVLSSSWAKDELTAWCYPDNKRVMYSYSQVVKNMENAYSTRQVAEILNKHKVTIEDYILDGKIRYPQKVYPIGIPDSDWYKFMYSESDIMDIHDFILEAGYSKDMPSKNELRALLKHSTILYTKTNEGNFVPVWKAE |
| Ga0208359_100000854 | F002501 | GGA | MMTCKKCNGRVFIDRVFSQKLHTELFCVMCGKRWMINKDTSALGKWLEKLEKAKEKNLAISS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |