NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208359_1000008

Scaffold Ga0208359_1000008


Overview

Basic Information
Taxon OID3300020541 Open in IMG/M
Scaffold IDGa0208359_1000008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49914
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (78.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F001464Metagenome / Metatranscriptome689Y
F002501Metagenome / Metatranscriptome553Y
F008245Metagenome / Metatranscriptome336N

Sequences

Protein IDFamilyRBSSequence
Ga0208359_100000828F000376GGAMINYQEQARQCLCCTKHVPLPTLLREYEGISLCPTTFANVLEYKRIWESIGSRPTGSIRKHFSEYTQKIVEKSISGVENGK
Ga0208359_100000830F000369AGAAGMEIELADHFDRMNKVVEELLRGNNPTQIATLTGFKRAEVVGLIDEWKNVVRNDTSARERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLSVKSGALKLIADIEGKRIGMLQEVGLLDNAELAGQIAEAERKQEVLVKILKEVTATCPKCKMEVAKRLSQITGIVEPIEIIEEVSGI
Ga0208359_100000836F008245GAGGMTEDNNTLQLISSITEFNDLHEFMKDEHLDKALSIVVKLLMNPDVPSAKAPLLIMELQAMSTKFAVMSSFYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS
Ga0208359_100000853F001464GAGMAREIRKGKRKKLSYFFLNNKIHKVLSSSWAKDELTAWCYPDNKRVMYSYSQVVKNMENAYSTRQVAEILNKHKVTIEDYILDGKIRYPQKVYPIGIPDSDWYKFMYSESDIMDIHDFILEAGYSKDMPSKNELRALLKHSTILYTKTNEGNFVPVWKAE
Ga0208359_100000854F002501GGAMMTCKKCNGRVFIDRVFSQKLHTELFCVMCGKRWMINKDTSALGKWLEKLEKAKEKNLAISS

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