NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207941_1003060

Scaffold Ga0207941_1003060


Overview

Basic Information
Taxon OID3300020539 Open in IMG/M
Scaffold IDGa0207941_1003060 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3518
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021716Metagenome / Metatranscriptome217N
F028720Metagenome / Metatranscriptome190N
F065451Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0207941_10030601F065451N/AMDTEQCVFTDFWKSYKTLVQNRLAPWKDDHALFLLSELSHAVLATLNPTPYDKDEVIENLLAGIVLVAYQKRGDFVLKLEFDRFEPRNELQRFWAPYINSEDPPRPAVQITQELLWLQARHVKNTEEFGTPYVCDHGYDKILHRVLKDCLKLLSSLTDLSIRTIAFRQMEKDV
Ga0207941_10030602F028720N/AMATKRKGFWKDYSKQVVEMTSEKNKKDPMDAFWCLNKALLDLYKVMDNRGGPKEVNRYSGYCLHFVVLLDTIVLNYGDFDLNYAMDDPNAFDPLCKSTLLSVASSLSGIARTFWVEKRIHNRGDPVRDEWESLEYNSSGETCHMLKLALTRVLRYIKTNTDLSLCEMAEQHVDIFYGREPSPARAYDLC
Ga0207941_10030603F021716N/AMHIILVGASHGWRLFQALKRIPGYGVTFKVTCLCVRGARFADLFWPQTVQKDDFLVVIPFGNDVHIRRFVKYDRFQKVFHLQKFVPYPKSYWDFLFSRLHEKLLDKNCKITVIDNFYRHLCCERHRHKGWLTYQTAVNKELRSQFKNTSVHILDHRLLFDNPRLIKNSALEYRKLQGDAVHFEDYMPIAKNLLKRL
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