Scaffold Ga0208722_1005388

Overview

Basic Information

• Taxon OID: 3300020537
• Scaffold ID: Ga0208722_1005388
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2636
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050892	Metagenome / Metatranscriptome	144	Y
F100355	Metagenome / Metatranscriptome	102	Y
F102508	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208722_10053883	F102508	N/A	MNRPSDRVTLAEFLDTKRIDATMYHLGGLRASWRAMARPQRIDALRAAALSLGNIADRQLPPGQRRARCQVAGFENCILMGVLALIAFTLAYTVGVEQGRARCPVGTAPTVVR
Ga0208722_10053884	F100355	AGGCGG	MTKPTPRPRPGPGIRVSGAIYDAVGNSSTVYTHLSAAAYEAVKQLQQETGEPLAGAFRSLIFKGAKSLGFSDSVSAVDALVAANGGASDARAVHHLVRLGAGLDPILINPPTP
Ga0208722_10053886	F050892	GGA	MGWGCFVADHGRSRQIMADHGMFWRRAQTALTHPSSYGSMISDPRHRLLLKRAIDAQTVVADELQSAFNARMALVPGHPQRLETVDLFRDWKALETLISGAHDLLGKASAVTLHGGAQP