Scaffold Ga0208228_1005887

Overview

Basic Information

• Taxon OID: 3300020535
• Scaffold ID: Ga0208228_1005887
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 25JUL2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2308
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015585	Metagenome / Metatranscriptome	253	N
F016361	Metagenome / Metatranscriptome	247	Y
F032250	Metagenome / Metatranscriptome	180	N
F080871	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208228_10058872	F032250	N/A	MQNEGNSSQAEISRGANTISTQVFKERDTYLQNILQIMEAVKEETVYQDNWLQYAVLHQNLMKLKEIDPNWKLVSYYEGDCIRLKHYSCSCF
Ga0208228_10058873	F080871	GAG	MSNPQRFSCSRSTIGFNQPKGERLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCKIIETIREIDPDYHLVVAPRSEDCLRIMHYDCLCNHSHGCKCALLKKKNLS
Ga0208228_10058874	F016361	N/A	MCKKRELTEEPLINRVRQPINERSIQTLLQKQLALMALIDTMTITMDPEKGKKVFQEIVSIMKELKNMEAKCTC
Ga0208228_10058875	F015585	N/A	MTKFRLHLYSKRSCIKYRFVKLKEVKMSPKNTERNQRLIKVINHCSRVAESKEVRELQLSPQLGELIKNLAGKGKEWSFILITYPKKNSEVQGKPPSEVKAEPGLSEEEKFFSSPW