NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208364_1005794

Scaffold Ga0208364_1005794


Overview

Basic Information
Taxon OID3300020533 Open in IMG/M
Scaffold IDGa0208364_1005794 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2041
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008996Metagenome324N
F044447Metagenome / Metatranscriptome154N
F044980Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0208364_10057941F044447GGAMKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEG
Ga0208364_10057943F008996N/AMRLLANIAYHHNPERIPNLIRVIEAIKSYPVQADIFVDTNDPEVVGLLADQPVTVHAHTQLAHPWALTAVHRTRIKETYKYFDWVAYFEDDMMLPKEGFINFTERFDLMFEDGLYPSFTRIETYDDKEGECTPDINQDLPGSVWCEWNGKDYVSLPYYINYHAFWMFSTKRLKEVLTRNPGELDHIPNNGLYRESLASFPIWSLNLKPMLEFTEQGELADHCKVFHLTNNYKHGSRDIKTIFKR
Ga0208364_10057945F044980N/APYFGGNFWWAKSSHIKELGEPARDHRFQAEHWIGKKPDTKVFDSNPGWPSPERFVITF

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