Basic Information | |
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Taxon OID | 3300020533 Open in IMG/M |
Scaffold ID | Ga0208364_1001484 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4739 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003378 | Metagenome / Metatranscriptome | 490 | Y |
F033780 | Metagenome | 176 | Y |
F060870 | Metagenome | 132 | Y |
F103171 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208364_100148410 | F033780 | GAGG | MNTCPWSLVAIHWIDAFDSANGWINTKDYKPKAQHVVSVGWLWPDNLEGYLSVTCSWCPDEEPEMDTIGMVTHIPLGMVQKVVMLGNPQFDA |
Ga0208364_10014844 | F003378 | GAG | MEVANKTVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLAAASTDGELTSEEIAEAFGKKA |
Ga0208364_10014846 | F060870 | GAG | VDANAALIVAAAVTAVGGIIVAIIQQFKKENHTDHQVVVGLLHVLRKSQMRVEDKVDRVDERLSNHLEFHATEGMLDNGRTIHQDGVEGISKIS |
Ga0208364_10014847 | F103171 | GGA | MGEQFTKMELKALARFLRKVYPGAADQDDLWNLINKVEQLTRGKQYARPDRRRGDSSSGT |
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