Scaffold Ga0208364_1001484

Overview

Basic Information

• Taxon OID: 3300020533
• Scaffold ID: Ga0208364_1001484
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4739
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F033780	Metagenome	176	Y
F060870	Metagenome	132	Y
F103171	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_100148410	F033780	GAGG	MNTCPWSLVAIHWIDAFDSANGWINTKDYKPKAQHVVSVGWLWPDNLEGYLSVTCSWCPDEEPEMDTIGMVTHIPLGMVQKVVMLGNPQFDA
Ga0208364_10014844	F003378	GAG	MEVANKTVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLAAASTDGELTSEEIAEAFGKKA
Ga0208364_10014846	F060870	GAG	VDANAALIVAAAVTAVGGIIVAIIQQFKKENHTDHQVVVGLLHVLRKSQMRVEDKVDRVDERLSNHLEFHATEGMLDNGRTIHQDGVEGISKIS
Ga0208364_10014847	F103171	GGA	MGEQFTKMELKALARFLRKVYPGAADQDDLWNLINKVEQLTRGKQYARPDRRRGDSSSGT