NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208364_1001014

Scaffold Ga0208364_1001014


Overview

Basic Information
Taxon OID3300020533 Open in IMG/M
Scaffold IDGa0208364_1001014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5852
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000763Metagenome / Metatranscriptome901Y
F023587Metagenome209Y
F053297Metagenome141Y
F073254Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0208364_100101410F053297GGAGMPKTNTLPQIKIVNVETGEEIVRDANTQELAQMEIDAANAPAKQAEVEAKANARQAILDRLGLTADEVAILLG
Ga0208364_100101412F073254N/AMTIWTPEYAVEVNGLGDVTDLTIANLTITLGRSDIYSQPVAGYGRFTILNLNQAATGFDVNDSVVIKVKDSTGTYVPIFGGDVTDIDVTVRTGEPAITQAITVTALGALSKLPKTLTEGVLAKANDGDQIYEILSNLLFNQWNQVPAAETWAAYNATTTWANAENSGLGEIDQPGDYELTARSASTTDVYSLVAGLARSGLGYIYEDSAGRIGYADSTHRGEYLAANGYAYVDAGWAYASGIATSRRLGDLRNEVTITYKNGQQETASDAASIATYGYQAQNIQTSIELKADAEDQAAFYLAIRAFPQDQFKAITFPLTNPNIPDVSRDQALNIFMGLPLDIEDLPANIANGRYQGFVEGWTWTSRFNALDLTIIVSPVAFSLQAFRWNNVPITESWNTISPTLDWNNATIVA
Ga0208364_10010142F023587N/AMKAKEVLQSATDVMQDRGAIYGHPKINQDRIARRLTNLLDFPIEDYQACLAMVEVKLSRIQESPGHIDSYIDACAYLALACELKTEEDELYV
Ga0208364_10010148F000763AGGAGGMNLKNPVVLATGAFLAAWSATNFDIDYRAILWSILSGIFGYATPKR
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