Scaffold Ga0208364_1000882

Overview

Basic Information

• Taxon OID: 3300020533
• Scaffold ID: Ga0208364_1000882
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6391
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000903	Metagenome / Metatranscriptome	843	Y
F003182	Metagenome / Metatranscriptome	502	Y
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y
F016643	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_100088214	F016643	N/A	MTIFNPVWRVIIGGTTYTNYALANLSITSGRTNIYEQANAGYVNLELINLDQSIIDIEINDAVSIELQDSTATFVPIFGGTVVEFDIGIATSGVVGINQSVSVTALGALARLPKVLTEGVLAKDFDGDQILSILTDLLVNSWNEVPAALQWSTYDPTIQWQDAENTGLGQIDTPGSYELANRSASTTNVYSLVSALATSGLGYIYENAQGQISYASADHRSIYLATNGYTDVSAAQAIANSLSIQTRAGDIRNEIVIKYGNNSANEVVDSDATSIALYGKLAQIITTTIENASDAEDQAAFYLTLRAYPQANFNQITFELTNPEIDDADRDALINIFMGLPLRINDLPLNMSAGTYLGFVEGWTWRAAYNTVSVTAILSPLAFSLQAMQWQDVSAAETWNSISGSLDWATALVVA
Ga0208364_10008824	F003182	AGGAG	MHILQFDCSICKKLYGKAKQRHGLKKGAELTEHEWFAQCMGCGTFGIKIVDDARIEELSDANL
Ga0208364_10008825	F000903	N/A	MIDRIEEVQCMIAAISHCHDRSADHSSRIVRNLSWFEYVAQNAESMVSEWVVAKALGYDYTPGITWDKSKADVGEHIEVKWSSNPHSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPSI
Ga0208364_10008827	F012452	AGAAGG	MAGFLENYEGNKERTDRWIKTFPQGRLEAHIVEFNADKGFVLVQAKAWRNQEETEPAGIDYAFGYREAYNPNMKRWFCEDTTTSALMRVMALVLGGTEKATKETMEQVKVNDATKPQDYDYWTTKFGEVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCRHGHRVWRTGTSAKTGKDWANYSCVGKKPDQCDPLWYVFTSDGTWKPQL
Ga0208364_10008828	F009883	GGAG	MNELSIVIFMIIAGALWAVMSYAVGFKEGQRQGYTRGRAVSRHISQLNEKVNN