Basic Information | |
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Taxon OID | 3300020533 Open in IMG/M |
Scaffold ID | Ga0208364_1000882 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6391 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000903 | Metagenome / Metatranscriptome | 843 | Y |
F003182 | Metagenome / Metatranscriptome | 502 | Y |
F009883 | Metagenome / Metatranscriptome | 311 | Y |
F012452 | Metagenome | 280 | Y |
F016643 | Metagenome | 245 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208364_100088214 | F016643 | N/A | MTIFNPVWRVIIGGTTYTNYALANLSITSGRTNIYEQANAGYVNLELINLDQSIIDIEINDAVSIELQDSTATFVPIFGGTVVEFDIGIATSGVVGINQSVSVTALGALARLPKVLTEGVLAKDFDGDQILSILTDLLVNSWNEVPAALQWSTYDPTIQWQDAENTGLGQIDTPGSYELANRSASTTNVYSLVSALATSGLGYIYENAQGQISYASADHRSIYLATNGYTDVSAAQAIANSLSIQTRAGDIRNEIVIKYGNNSANEVVDSDATSIALYGKLAQIITTTIENASDAEDQAAFYLTLRAYPQANFNQITFELTNPEIDDADRDALINIFMGLPLRINDLPLNMSAGTYLGFVEGWTWRAAYNTVSVTAILSPLAFSLQAMQWQDVSAAETWNSISGSLDWATALVVA |
Ga0208364_10008824 | F003182 | AGGAG | MHILQFDCSICKKLYGKAKQRHGLKKGAELTEHEWFAQCMGCGTFGIKIVDDARIEELSDANL |
Ga0208364_10008825 | F000903 | N/A | MIDRIEEVQCMIAAISHCHDRSADHSSRIVRNLSWFEYVAQNAESMVSEWVVAKALGYDYTPGITWDKSKADVGEHIEVKWSSNPHSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPSI |
Ga0208364_10008827 | F012452 | AGAAGG | MAGFLENYEGNKERTDRWIKTFPQGRLEAHIVEFNADKGFVLVQAKAWRNQEETEPAGIDYAFGYREAYNPNMKRWFCEDTTTSALMRVMALVLGGTEKATKETMEQVKVNDATKPQDYDYWTTKFGEVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCRHGHRVWRTGTSAKTGKDWANYSCVGKKPDQCDPLWYVFTSDGTWKPQL |
Ga0208364_10008828 | F009883 | GGAG | MNELSIVIFMIIAGALWAVMSYAVGFKEGQRQGYTRGRAVSRHISQLNEKVNN |
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