Scaffold Ga0208364_1000625

Overview

Basic Information

• Taxon OID: 3300020533
• Scaffold ID: Ga0208364_1000625
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7987
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006467	Metagenome / Metatranscriptome	372	Y
F018159	Metagenome	236	Y
F038213	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_100062510	F038213	AGG	MTRSQVDAIIDRLDAQSAKIDALKAEIDQMKGGLAVLKGLGALLGVGGIGTLLAWLQSQSGK
Ga0208364_100062512	F006467	N/A	VVAVLRNIINDLVGGSWTILGLLFAVVVLPEGQTQSTMATLFILMTIIWVATGYLRWKE
Ga0208364_10006253	F018159	N/A	MSFADKTVIEAVREHLESTPSPVGYALRKVHAYPPDNIAVAPAAVIIPGDDTIAYGASNRQITLTLNVVIYLTPQADLARKYEDLMTWRTWLRDAFIDGVTLDNASGVAQASVTSTNIGTDTWGDADFLTITATVEVSSVEAIATSA