Scaffold Ga0208364_1000245

Overview

Basic Information

• Taxon OID: 3300020533
• Scaffold ID: Ga0208364_1000245
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12983
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017271	Metagenome / Metatranscriptome	241	N
F020651	Metagenome / Metatranscriptome	222	Y
F043816	Metagenome / Metatranscriptome	155	N
F054663	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_100024519	F020651	N/A	MNVAVILLTLNRNDLTKRVIDQNFFNSGYDADCFLVDNGSNQVPYDLFNWTNCNVGYKRGIGAGVNAGLKMTRGYDGVCLLANDILLPTNWLKNWVMFAQKVPKTGIIGIHCVEDLPPLQDGIHKTHVPFGNNFITRELIDTIGGYNTEYDPYGMQDRDYAERAVIAGFTNYYIPDLRSEHIGHDVGNGTEYRAMKDASLQKAQAVWEKYQPIYHTEKKIRCEF
Ga0208364_100024522	F054663	N/A	MEIKQEHREWLAANINNYECAKNGYIRNLELDDLKMYEHIYRTYLDPNFIVSVWCGACKFEMVMRLYQWFEKQ
Ga0208364_10002455	F043816	N/A	MKQLTDLRDWVDQQCKSGQPFTCADVLNKIDEILESDQDIQELLVTSCYEME
Ga0208364_10002457	F017271	N/A	MITNFEEITKELTEDEKKLVPLIIKGLSTKTKDNPIKGADIVNAINENKARYGIKLFSEPRLRKIINFIRSEGILPVMGTSNGYYCTKDKAELLNQIESLTQRAEAIMTSANGLKKFIL