Scaffold Ga0208235_1002293

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1002293
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3059
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F004666	Metagenome / Metatranscriptome	428	Y
F019324	Metagenome / Metatranscriptome	230	Y
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_100229310	F019324	AGGAG	MLGYSDKDLDDMIYAIQSAVTTVNPDDDPFLHGNLWKAQEFLQGLWAEGYFD
Ga0208235_100229311	F000868	N/A	REKMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQMYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK
Ga0208235_10022932	F095357	AGGCGG	MATSKEIKLGELLANSVEDHWFNPATLGHYLSQQPHWTIDRVMEVVLWIIEKNAGVYKDKAGHQEVSEGLAIAYKLDQVVDRIKQSNKFNHIRIP
Ga0208235_10022933	F004666	AGGA	MATKREYLASKGITVGRRGRFSSAAMKAIQDAENQGIQFTAEKKTPKK