Scaffold Ga0208235_1001274

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1001274
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4551
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F042747	Metagenome / Metatranscriptome	157	Y
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10012746	F042747	GAG	MLGYSYEDIQGFGSTLRLAELMAIDTGEPEIREGLMKIWDFFEGVLAEGYIAEEVGASE
Ga0208235_10012747	F094887	AGGAGG	VSKELKEINEALTSLWWSAEISDNAKLWWNDHYQQLMERELAK
Ga0208235_10012748	F006618	N/A	MVERPLSTTNGEGISEVSKIKRHLEEKIVISHSSEENTAWKRYICFQYEGNEYELTLFWDEFNGYEIFWREPDTTPNWVVEWDSEAHSGMSFEHYLDDLTWEMNK
Ga0208235_10012749	F006842	GGAG	MSYTPAICGDHLVPISECDCVNYLQELKTSAERLVQLTKEREELSK