Scaffold Ga0208235

Basic Information
Taxon OID	3300020530 Open in IMG/M
Scaffold ID	Ga0208235_1000910 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020530 Open in IMG/M

Scaffold ID

Ga0208235_1000910 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5904
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5904

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N
F100999	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10009102	F005740	GAG	MKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNGNQVCVGKQLIDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGAWIDGEKLTLALPYVQSTKKFIELTGVIREATNTVSRLYEYDATTALETDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPCADAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0208235_10009104	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQSFISPRPGFIQKDYNLCTTITADNAEITADQTNVTADGWSENCYGSQSLTGTFQCALPYIGDNGQTFILMLISGKVWLYDCLQNNAQNLTVSPNLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTNLRRATDDEIKTGKMMSYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSIQAPVDRDTWKNLNYPIQAISLLTSGALGSRSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEILNIAENDQTNLLWASSAVVFDNRLLMTGQPRYRADGVIHKALMVLDFDLITSLRKKFPPAWAGIWTGLDVLQILKTENAYGDACFAIARGSDNTIQIWEVSKTSKFDSNLSDPKKEIQWLVQTRAYNFELPFGLKKLDSGDIFIDSLDGNVGFNVEYRPDQYPSWLEWAEWSECAITTQCDNLCPISNFQPQYRPKMRLPTPTDIPCNSTISTPTRNLYEVQLNISISGYCRIKSIRVHAYDVQESAVGECRTFQGCKILEGCDINPLLYSSE
Ga0208235_10009106	F100999	AGG	MAEQASEHPLIQHKYGIRSPVKIPDLELELYAFRNRLQPNEGGLGTFDHFVNATKMLWPKMSWNPWLEAQVESLCEHDYVGWAGCGASGKTFGATLFATVWWLANPSKTTVVLT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208235_1000910

Overview

Ecosystem & Geography

Associated Families

Sequences