Scaffold Ga0208235_1000134

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1000134
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20203
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014143	Metagenome / Metatranscriptome	265	Y
F061792	Metagenome	131	Y
F093270	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_100013417	F093270	AGGA	MPDIQTALKSAIDAWEPTPTGQQLKEKLMTKTPFAIQNNVTRVTFDYIKLHPGTTAAAASRDLTKHGFKESSVTALMAQFVRAGLAVRDNNHGYRVTVDEYTPMKASAKYTKKDVVKAKPAPKAREPQNDGIAALHPEATSKRVVNTIVFGKTPQEVIKHMNVLQARELYDYLKKVFGG
Ga0208235_100013418	F014143	AGG	MNIKYLTHVRRIFATYDAPPETIRSYQRQWVRCIRRLGDKWLDSRPVPRLDM
Ga0208235_100013422	F061792	AGGAG	MAYICRNYGEALGTFAMRGAVRSKAWQPNERPLDPKPRSEHRLIEGSNEYGKYFDVKLYQTVMARFYEPKVVDGKRVERRLYMGHNSQTSQQFMRHTLRVDLGVNVDWRDNTTHADELIIMPIYTKAFMVDGDRDTPFSLDAVFVDGLLDPTQSEHTKHYRLVADKDVRAFKQRVAAHFEPYIMLAQMRLPEFKAECKLDYKYGQAFGGEGYNREYYMAIQEMWNDPEPQQRFIDTFFDMCQSAFNIIASKRGADQEDFTMTGSWYSRNSVPSSIDDLKKPIEMVEFRRAILDRIQKYVGSNSLKKPEEVKQFPRNSEYPRSNIHT