Scaffold Ga0208233_1000103

Overview

Basic Information

• Taxon OID: 3300020529
• Scaffold ID: Ga0208233_1000103
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14958
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048980	Metagenome	147	N
F066602	Metagenome	126	Y
F067691	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208233_100010318	F048980	GAGG	MPKPYEAPKAPVVSGKLAGTEKWVDLAEHYSGGALWNNGTWVQRDIKGKPGQISNHAKGIAADLSYRRIEPRNKGVSGGRKKSLDFINRCLANYDVLGVMLVIDYWPQPFGRSWRCDRAGLGVVKPNHAEAWRQATVETFFGAPCGDWWHVEITPAMANDPKAVEAAFNAVFGVSTTTP
Ga0208233_100010319	F066602	N/A	MNNDAKLQTADQTLKGAFIGLVTYLAYKYGWDMQLIALGIPVVSGVLAWVSTLVGNRNTACLFVKKSEDNA
Ga0208233_10001035	F067691	GAGG	MKIKLRVTVKPGDEPIEVMTNLLCVTEWERAENRKISDGRGVGMSDMVAWAFFMLKQSGRLIKETTWRDWLQNNPDMEIEGVDMTDPNPTEPAATAGH