Basic Information | |
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Taxon OID | 3300020529 Open in IMG/M |
Scaffold ID | Ga0208233_1000103 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14958 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F048980 | Metagenome | 147 | N |
F066602 | Metagenome | 126 | Y |
F067691 | Metagenome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208233_100010318 | F048980 | GAGG | MPKPYEAPKAPVVSGKLAGTEKWVDLAEHYSGGALWNNGTWVQRDIKGKPGQISNHAKGIAADLSYRRIEPRNKGVSGGRKKSLDFINRCLANYDVLGVMLVIDYWPQPFGRSWRCDRAGLGVVKPNHAEAWRQATVETFFGAPCGDWWHVEITPAMANDPKAVEAAFNAVFGVSTTTP |
Ga0208233_100010319 | F066602 | N/A | MNNDAKLQTADQTLKGAFIGLVTYLAYKYGWDMQLIALGIPVVSGVLAWVSTLVGNRNTACLFVKKSEDNA |
Ga0208233_10001035 | F067691 | GAGG | MKIKLRVTVKPGDEPIEVMTNLLCVTEWERAENRKISDGRGVGMSDMVAWAFFMLKQSGRLIKETTWRDWLQNNPDMEIEGVDMTDPNPTEPAATAGH |
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