Basic Information | |
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Taxon OID | 3300020527 Open in IMG/M |
Scaffold ID | Ga0208232_1000810 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5989 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F034147 | Metagenome / Metatranscriptome | 175 | Y |
F059884 | Metagenome / Metatranscriptome | 133 | Y |
F088879 | Metagenome / Metatranscriptome | 109 | Y |
F099147 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208232_10008102 | F059884 | N/A | MLLVGRTKLPYEQLFCLSRKELKALIKGHEIDQKDMVEAMRTHAIIGLQPHLKKGANLDPLKLWPLPWDNFGKPLETTPQDFAKAKKLLEIASKLERNGKSKNRR |
Ga0208232_10008103 | F034147 | N/A | MAKYHSAPFKEGEIFFYPNLGSLANFEDSTGLGIGEAFTGSSIPKLDYIYALLHECHKVACLRKSTNSVSLDELKVWIEGKDVMKLFNNVLSDLLLELGVGESQEKKT |
Ga0208232_10008105 | F088879 | AGGA | MREIATDIRIAVINAITPLTLSGVTIPIYDTELPPTINPANYVNSAAFVLITDQNEAETTNNDCSIRQNATIQINIVTKFPQGSGGKKLSENISNAIQQKMTLDYLTLPDDLQVINIRKNFSRTQIEQGSSQIAYQKILSYTLDIFFVS |
Ga0208232_10008109 | F099147 | N/A | MIKLLVDLAPFHKDEVISVGKTYDTYLVNKGLAIWVKMDKQEIKTK |
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