Scaffold Ga0208858_1001130

Overview

Basic Information

• Taxon OID: 3300020524
• Scaffold ID: Ga0208858_1001130
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4824
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004762	Metagenome / Metatranscriptome	424	Y
F009683	Metagenome / Metatranscriptome	314	Y
F014016	Metagenome / Metatranscriptome	266	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208858_100113011	F009683	N/A	MKDIREGEQVSDTQKSLNEWLESAGDTLFDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLAIIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFSTPEDW
Ga0208858_10011304	F004762	AGGAG	MASPEQVLLFLRPNGGYVQVGTEYEGIIFQPSCEPFTKSEYEAGFAQYDAWKAQQEAEQAAAKAAAEAKLEALGLTADDLKALGL
Ga0208858_10011309	F014016	GGA	MINKVALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVDADVS