Scaffold Ga0208858_1000046

Overview

Basic Information

• Taxon OID: 3300020524
• Scaffold ID: Ga0208858_1000046
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33502
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.87%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010833	Metagenome	298	Y
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020348	Metagenome	224	N
F032653	Metagenome	179	N
F043784	Metagenome / Metatranscriptome	155	N
F054029	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208858_100004619	F032653	N/A	MRLILLALLLTSCASVKKFEKRYDSTGTTKIDSVHLTFYDSVTKIIEKEQVFTKEVTIYDTIRIAKDSIIVVPKIVTKWIYETREKENNNSLIKKDTIALNRTETAQISMVDKNKVTTQNNFWKALIGLIIAIILILAYWNKLWK
Ga0208858_10000462	F011074	N/A	MQLVGINNPGEVKLAILEDWIRTEYGGFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKLLENRTFDRLFNPLSVFTKLNSSGIKVWTKEDGAVAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFEEQIKIGKVSFS
Ga0208858_100004621	F010833	N/A	MKYKQLLQLATTLKYVIGSQETKVQKKLFKVQEKIAKYLDEYNKQVEELRLDNASVDEKGILLLNEKSDYKFSKEGIKKLTKDIEALNDKEFDFQIINVVNPQGLENFTFLQDWVTGVEFNKQEEEEL
Ga0208858_100004630	F043784	N/A	MNAKDAIMQIRALFEDMPPVEVPAPIEEAINDEVPVTFAEYSLMDGTKVMISEMAIGGEVTLADGTPAPMGEHQLADGTKIVLDEASKILSIETPEAEAKEAEEVPAEMGNKIDEKMADEIAALVSQNENLKTQVAQLEAKVKNGFSQVAELIEALTKTPNAEPIAQPRNNFGSNVTTHNMKYDRIEKFRNALLNK
Ga0208858_100004637	F054029	N/A	MELQQIFETTKEQRVEFTHQLIERLNAGELDPLKTHLQVKALEDMLETLKANKDYKDAVLQAAVLNGKDFEYMSAKFNIREVGVKYDYTKCESPAYEEILNEYNSAAKAKKDMEDFLKKVPHQGLDIINGVTGEVTKVYPPAKSSTTSVAVSLK
Ga0208858_100004650	F020348	GGA	MEIEHRNYLDLHRPNYEMVQNGYVRNIDLDILKMYEHIYRKYMNPDFILTVWCSHCIFDMIKRLYEWYDIQPKPKNKKKNG
Ga0208858_10000468	F019816	N/A	MRELLPFERQMLLAEVYHYAWYNEEAYEDLLAFIKKYENKLDKPVFFNPINNNDTETTNLETFAFGQNIDTNSGSNEVQ