Scaffold Ga0208226_1004986

Overview

Basic Information

• Taxon OID: 3300020523
• Scaffold ID: Ga0208226_1004986
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18MAY2011 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2079
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012849	Metagenome / Metatranscriptome	276	N
F016144	Metagenome / Metatranscriptome	249	Y
F017607	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208226_10049861	F016144	N/A	QIAAGGIAARGAALAAENADYTLTNLEFRCVRYHMGPEFDIAEANVLQSGNKYKLWFPNYTVQSGRPVPSNNKATTERFSISTQSLDYVIGTFRLPTYDTPGKPLNTLISSQDALEEGSSRATADEQVNSGLRRVYNQSKYFAHNGDSIVTTKWRIGNNSYEPQNIDEQFNSLLQHFNINQDTMSGIYPGINSIGAFRDHSYASICSLNFPEKGNVYTVSGLDTEQTPASIEWIVTSSTFTPAGGLAGNYAITSGVNCLPYLICAYSSHLEIGAGRVINLIP
Ga0208226_10049862	F017607	N/A	MNINTFYFKKDIVKSREAFNELEKVRLNSKPTKKPLILDQSNIPPDMMNTIRNNNAFENEFWRTHNPYKFTPHIDYKPKYTSPYYAPQETGFGSFSYESYVNNLKRI
Ga0208226_10049864	F012849	N/A	FTNLCIRNRHIIPGNIIIAIQSIMNVPKTIRLNANLLALFKFADSETVLEDVYPLFSAFVKEEQFKELYEYATKEPFDALVIDATRGKPVFKKNFDKVLNIS