NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208481_1003628

Scaffold Ga0208481_1003628


Overview

Basic Information
Taxon OID3300020520 Open in IMG/M
Scaffold IDGa0208481_1003628 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 02JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3403
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097222Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208481_10036282F097222GGAGMSRERELKYAAQSSEPPPLPHGWSLGPERTIAEIVDTYLDHAATLITRGWALRRRETVGAPTRYTLKRNAQQVGAFHQRDEIEREGDQIPAEIVHEIGTQLASELREIVAIRQRRRSWPLQLNGSVVADLTTDVIQSGSAQWTELEVEFVASVNDATATELAETLQAFFAGDETLTPSRQSKLEAAIAAL

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