Scaffold Ga0208223_1001557

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1001557
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4928
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F010248	Metagenome / Metatranscriptome	306	Y
F011938	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_10015573	F000473	N/A	MFINKDKDHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPSMLLMDIVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVTKIKRLLESYGVRCELEGKPSERVL
Ga0208223_10015574	F011938	GGAGG	VKEYYDVTHIVYIHGEDSHGTVEKLGAYASVVKYTKDGVEYSELMENDEFTIVDEIVFKHIEESN
Ga0208223_10015575	F000671	GAGG	MEKILCYSCNKSKNKLDAKKSSLLPINLLICETCISAKLEPRWVIILAGRSQGPDYVKEFIIKRRYIGNEITASELLV
Ga0208223_10015576	F002060	N/A	MDYTSIVIAISAAVLSGMGTAIIAGLKENKREKVRKHEREQDQLKLEVKDLKIELYKIERELTEWKDKYYNAIQELIGVKAELEETLLKLTFIDHQIEDLQGLDREF
Ga0208223_10015579	F010248	GGA	MQFQIEYLNTAVRLLLDNNKVAGPEMDAGKWYKAKLDKDK