Basic Information | |
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Taxon OID | 3300020519 Open in IMG/M |
Scaffold ID | Ga0208223_1001027 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6303 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001176 | Metagenome / Metatranscriptome | 756 | Y |
F007921 | Metagenome / Metatranscriptome | 342 | Y |
F084237 | Metagenome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208223_100102710 | F084237 | GAG | MTNPDRDRSMRLKLAIEEMLKDIDMSGEEWNDHDKDGVPYWEKYEERLKYMEENGI |
Ga0208223_100102714 | F001176 | GGA | MATPPNNQPSGAVTSQEAGRKNPSQGKFRSGVNGPRPATKIDRNKHGIRRETTIGPKKTRPKKV |
Ga0208223_10010279 | F007921 | GGAGG | MINWLVNRIFRWDPLRRAIFDEVRLYQSIDRSIWEAEKESPTNLTWSEGDRWYGWTYNRELKRYYFDDIGNDSLMGLWEDQWLREADEQRSL |
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