NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1001027

Scaffold Ga0208223_1001027


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1001027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6303
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001176Metagenome / Metatranscriptome756Y
F007921Metagenome / Metatranscriptome342Y
F084237Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208223_100102710F084237GAGMTNPDRDRSMRLKLAIEEMLKDIDMSGEEWNDHDKDGVPYWEKYEERLKYMEENGI
Ga0208223_100102714F001176GGAMATPPNNQPSGAVTSQEAGRKNPSQGKFRSGVNGPRPATKIDRNKHGIRRETTIGPKKTRPKKV
Ga0208223_10010279F007921GGAGGMINWLVNRIFRWDPLRRAIFDEVRLYQSIDRSIWEAEKESPTNLTWSEGDRWYGWTYNRELKRYYFDDIGNDSLMGLWEDQWLREADEQRSL

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