Scaffold Ga0208223_1001027

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1001027
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6303
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F007921	Metagenome / Metatranscriptome	342	Y
F084237	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_100102710	F084237	GAG	MTNPDRDRSMRLKLAIEEMLKDIDMSGEEWNDHDKDGVPYWEKYEERLKYMEENGI
Ga0208223_100102714	F001176	GGA	MATPPNNQPSGAVTSQEAGRKNPSQGKFRSGVNGPRPATKIDRNKHGIRRETTIGPKKTRPKKV
Ga0208223_10010279	F007921	GGAGG	MINWLVNRIFRWDPLRRAIFDEVRLYQSIDRSIWEAEKESPTNLTWSEGDRWYGWTYNRELKRYYFDDIGNDSLMGLWEDQWLREADEQRSL