Scaffold Ga0207935

Basic Information
Taxon OID	3300020516 Open in IMG/M
Scaffold ID	Ga0207935_1004710 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020516 Open in IMG/M

Scaffold ID

Ga0207935_1004710 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2496
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2496

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013499	Metagenome / Metatranscriptome	270	N
F014823	Metagenome / Metatranscriptome	259	N
F016116	Metagenome / Metatranscriptome	249	N
F021930	Metagenome / Metatranscriptome	216	N
F083681	Metagenome / Metatranscriptome	112	N
F088321	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207935_10047101	F083681	N/A	PTLKMNEQEGIEELGRLKRVASIRKDMCKVIQLLGHRVKILKLQLAQLPSEEKNLIRFQLDNALDETIKVVSKISHNFQKEEKKLILELSHQ
Ga0207935_10047102	F013499	N/A	MSEALKDIRTTVSGIKGLVMMLQAYQRDLVSKGEPDPSEGSLETARSAINQLKEKIETIVGPEEPTGAEGFEVEVHESEDQSQTE
Ga0207935_10047103	F016116	N/A	MVEKLAKHERLALYNLTEKEIDQLEEELVKQFPKEQFAETYIEMWQIYRDTKAIQIYSLIEAKYPGSHNEEKRAVIWFEIATLFPHRLHELVKNLREWN
Ga0207935_10047105	F088321	N/A	MGERIELTPLEYLHGGLAASDKLRAQISNLIKQEFAKSQNLRARMSKIHSSIKINQTKANRLSEVFKGDEEVLPLVSRYIANLVQLELITACDNIERMYEAMICLEECQIKI
Ga0207935_10047106	F021930	N/A	MSDQDLRRVTDLLKEVELEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLAIAEKLAVQLSEIEYIISRQSLEQMEKLMKIVTSEDYEEAREKIDLRFTK
Ga0207935_10047107	F014823	N/A	MSKKSNKSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRRENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVHRQARSEKEIENLQSTAVAEKKVDLPE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207935_1004710

Overview

Ecosystem & Geography

Associated Families

Sequences