NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208234_1002724

Scaffold Ga0208234_1002724


Overview

Basic Information
Taxon OID3300020515 Open in IMG/M
Scaffold IDGa0208234_1002724 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2651
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F018001Metagenome237Y
F024555Metagenome / Metatranscriptome205Y
F038234Metagenome166Y
F038242Metagenome166N
F062757Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0208234_10027243F024555N/AMLTIKNIEKLTQYGAVEDWRVGKVVTLDSSYLIQLYKHNRRETMQVNIERTPIGEGDTALYELWFWEDDSGGAKPIRRLLRKCDFELGPLYVIKNIENMMDLK
Ga0208234_10027244F038242N/AMLTIKNIKELELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLATRHFVTIDDVKTKGGLASEISKVLAKAEHWWKTEATK
Ga0208234_10027245F007690N/AMRNTTNETQNKTDKEAELSIKTKPKKILNSTRWGVDDIDKLNYMLTIKNILKLQSQPIWDGWEVKLIYEGNHNDTYVFQLVKRKPLPMHNELCTIMLERIGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL
Ga0208234_10027246F018001N/AMLTIQNIGDLNGAQLNDWKVLTAGEDNRPELGKNIYIITFARMDNTGVMLDDRAGVIIDRNINPLLKGYHIKVVYESWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRNSK
Ga0208234_10027247F062757N/AMLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYLFDIHCNGPIGNRIDGCTISLNRIGELQRNMFKPDTTAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKK
Ga0208234_10027248F038234N/ALRIKNIESLKGTYVGHWKIHYVAELQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDTFIRFLIDELI

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