Basic Information | |
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Taxon OID | 3300020515 Open in IMG/M |
Scaffold ID | Ga0208234_1002724 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2651 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007690 | Metagenome | 346 | Y |
F018001 | Metagenome | 237 | Y |
F024555 | Metagenome / Metatranscriptome | 205 | Y |
F038234 | Metagenome | 166 | Y |
F038242 | Metagenome | 166 | N |
F062757 | Metagenome | 130 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208234_10027243 | F024555 | N/A | MLTIKNIEKLTQYGAVEDWRVGKVVTLDSSYLIQLYKHNRRETMQVNIERTPIGEGDTALYELWFWEDDSGGAKPIRRLLRKCDFELGPLYVIKNIENMMDLK |
Ga0208234_10027244 | F038242 | N/A | MLTIKNIKELELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLATRHFVTIDDVKTKGGLASEISKVLAKAEHWWKTEATK |
Ga0208234_10027245 | F007690 | N/A | MRNTTNETQNKTDKEAELSIKTKPKKILNSTRWGVDDIDKLNYMLTIKNILKLQSQPIWDGWEVKLIYEGNHNDTYVFQLVKRKPLPMHNELCTIMLERIGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL |
Ga0208234_10027246 | F018001 | N/A | MLTIQNIGDLNGAQLNDWKVLTAGEDNRPELGKNIYIITFARMDNTGVMLDDRAGVIIDRNINPLLKGYHIKVVYESWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRNSK |
Ga0208234_10027247 | F062757 | N/A | MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYLFDIHCNGPIGNRIDGCTISLNRIGELQRNMFKPDTTAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKK |
Ga0208234_10027248 | F038234 | N/A | LRIKNIESLKGTYVGHWKIHYVAELQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDTFIRFLIDELI |
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