Scaffold Ga0208234_1000887

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1000887
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4970
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042870	Metagenome / Metatranscriptome	157	Y
F043902	Metagenome / Metatranscriptome	155	Y
F093303	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_100088710	F043902	GGAG	MTIQQLRNDGYKVRVLHNRLYNGYYKWQVGSKPSGDHGYGPVDPDTKGGSTQIVIDSPSGDHYEGLAICSKKENYNKKLGVRIALGRCNIKQPLYIPTEVEND
Ga0208234_100088716	F093303	AGGAGG	VTENERFVIFWLYNTVAKKMPSNPYGSDDIILNGINVTETVRKLLQDRLFV
Ga0208234_100088718	F042870	N/A	MSTLPDSKIPWWDNHYEDTYSEEVEDGYPYDIGTKVQE