Scaffold Ga0208234

Basic Information
Taxon OID	3300020515 Open in IMG/M
Scaffold ID	Ga0208234_1000572 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020515 Open in IMG/M

Scaffold ID

Ga0208234_1000572 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6287
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6287

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F051687	Metagenome	143	N
F067392	Metagenome	125	N
F093228	Metagenome	106	Y
F094889	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_10005722	F051687	N/A	MRNSGFKMDMSGIRRKQKELAAIPARIFKPEISNYFLRPSLNKAKAATPVRDLATIRENQVGKPNSQYAKWKARGGGQGVTKAQFLADRAPARFLFQLQWVQVGYSLGVNVTASAAVLSATTRNHNEPDIPQGRGQWHGGQTKLTASISVPFLDAPERKYKPFTGQGILTPIMAAQFPVFNRACARKMKRVVAAIARS
Ga0208234_10005725	F094889	AGG	VSDATLDDHADALDSERKDRAVAMLGLPELIAGVQVEPLTPRRLEWLRAMGNPFVCGGDCPIAAIPDFLWYVTKDFAFGDDERRKAFLAAILDLDVDEARDGIDEYLDRAFLDAGPGREGVSFYGSTAGLYCSLNTAYPGAGWHLERVLDTPLRVLYQIIKAADDSRGCSMQNRRSSPLISKFLSEIEHFELSIVKDFDAEMDAFVDAKCAEGYKLCSEPIQKINLAIPAACQQDAPWIVPMRKVN
Ga0208234_10005727	F067392	N/A	MVGTLSSVTFDGPGRYVRPFQDRGDTQSFEWHIDCYQLAANFTPFQNARYYSTGFVSPVENMQYVTTSLGVAYLVHEEQPEYTACKGWLKFKRVYASLPITRQEGTSVVHSFQFYSTQPGYDWTEPPPAPEVAEWPLVCSGYYLYEYFLSYWPEPLRAPKITSLFGFLLMTNIPPNTGTFVSKDSEISIYKGSIIERKTLYVNTPTIAELSA
Ga0208234_10005728	F093228	GAG	MEPVKLANPENAFEGGVLDKKWMFNVVGHLNLWHAGEVKLPSSEWGSGKILVSNTGWVVDLTRLKVPASSQVQSQREFQIVAFGANTVKIYNGTLFGQLPTGFSVNNSPIKTLTVANGDKIYAKVTWNRTLNITGDIVSTITTRTIEAAATVPANDPQAGTRHYQLATVTVDGGGVVTVSQTRWGPIDDLPGTARYNYYMGSSGTSAQTDYWDLLATGKGKQAGGVTDIAPTYDSIQLTSSAFSRFVISGTNLLIFARNGTLNSQGQFTYASTETKVFDKPVICETTVDVLVGLRLNGGYLEGQYRTIKVNAVTTPSPEWVSTGIPVTAGTTIQCV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208234_1000572

Overview

Ecosystem & Geography

Associated Families

Sequences