Scaffold Ga0208234_1000162

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1000162
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11025
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012658	Metagenome / Metatranscriptome	278	Y
F054798	Metagenome / Metatranscriptome	139	N
F074805	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_100016220	F074805	N/A	MDVVIGFQFERVSMNDVILFGAIFAAAAVAVVGFVFYSVYGGSKASLANAQEGQVFNFVYEQPLHGTHERFLAKVIGKQTLTADQIARLNRKSRYRINDPEFVRTSNLVTCRTADGKVRNFYAERVTKCRKPLLAGALFKSGFANLF
Ga0208234_100016226	F054798	GAGG	MIYLNINEIERLAEIVAELVKLDMCVIAELKGTKWSIEVTKG
Ga0208234_10001623	F012658	AGGA	MLQTNYKTVTNNLDKIFSAMRAGKYHCVLDPKGNAHVGLINGIMREDGSGKNWIVTVTNRTVSEKVFIHAS