Scaffold Ga0208234_1000094

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1000094
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14467
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002135	Metagenome / Metatranscriptome	590	Y
F002357	Metagenome / Metatranscriptome	567	Y
F028508	Metagenome / Metatranscriptome	191	Y
F088792	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_100009410	F000468	GGA	MTVFTPDWKLTVGGVDYTDITIADVQHQAGRTDIYEQPLPSYIQLTLVALNNQTLPFDINDSLALQVKNTSGTYVDLFGGDITDLTVAVGATGSNAAVVEYTVLAMGSLTKLTKEIWDDNISQDEDGNQIYEILSSVLLGTWNDVPAASQWSTYNPTETWEDAVNLGLGEIDQPGLYTMSSQSNVTDTIYNVVSDIATSAFGYIYEDNAGNINYADADHRQNYLLVNGYVELDARHALGAGLSTIMRSADVRNDIYINYGNNYNSQVDATDAASIALYGYKAETINSRVHGATDAQAIADRYIAQRAYPIPAFQSITFPITNPEIDNADRDDLLAVFMGMPVHIQNLPNQISGGDFEGYVEGWSWSTRFNELFLTINVSPVAFSQVAMRWNTTPATEAWNTLSPTLTWEYATIVA
Ga0208234_10000942	F088792	GGAG	MEIVGYGFIIGCLIGAVLYFWDEHRKSEIYDNGYYAGRAAGWKSCIDHQAKIQKLKLEQVFDYDKN
Ga0208234_100009426	F002357	AGGA	MGFNLEDYEDVATLNKWFIANFPMGRSDISVVSHDATNGYILIQATLWRDSTDDKPAASNLAFGSRETFMPNMKKWYVEDTASSALGRAIILLKGSNKTATKDDMKRVETSEPNQYEKKLQERRYGAPGTKSAAIEDALRASFAVENKVDDPQQWSLSEAVDAIGKSTPNPPPECEHGMILKQGVSKGGKPYYGYVCKGSNKEHAIWAKMTAKGSWYFEGVQ
Ga0208234_10000944	F002135	N/A	MANTRKRTPRKKVNRRVVRQTPEPLSKLDQFYIAKHEMFRAARKAGFNESCALYLMDNPESMPDWIVGDKGIIPTIPTPDEDED
Ga0208234_10000948	F028508	GGAG	MAKSSRPMVRIHDLATDEVIDREMNDAEFAQYQTDQEIQAAKKAEATAKAAEKQAILDRLGLTADQAKLILG