Scaffold Ga0208090_1001148

Overview

Basic Information

• Taxon OID: 3300020513
• Scaffold ID: Ga0208090_1001148
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4904
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F005348	Metagenome / Metatranscriptome	403	Y
F084217	Metagenome / Metatranscriptome	112	N
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208090_100114810	F000808	AGGA	MDKEYTYSLTTSYDGELINTLRVSDMLTAVDAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0208090_10011484	F084217	AGG	MSDYLNYLDEVYNDLVSEYGEGINLAYHEANKSEM
Ga0208090_10011486	F005348	AGG	MINDVMRFDCNECGGVGLLFWGDNLDYSIEKCECENFALGTLFTSGEAD
Ga0208090_10011489	F100416	AGAAGG	MGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAISADEIMELKGL