Scaffold Ga0208086_1004053

Overview

Basic Information

• Taxon OID: 3300020510
• Scaffold ID: Ga0208086_1004053
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3196
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004366	Metagenome / Metatranscriptome	441	Y
F016965	Metagenome / Metatranscriptome	243	Y
F033725	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208086_10040531	F033725	N/A	MITILNREIPNQLEELTIEQFEAITDINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVKEFNSAERKEYPTVEELEIDGYIYKAQMKLTVRDTKLIEKITLKKEKGYISEMLAVMFKREDLTPTEHYTDAHIKQKAKLIRKLNAAISIPYVMFIAQKIGQQANDQATAELEPSNA
Ga0208086_10040534	F016965	N/A	MFSINGIEYTITGPIEVISDTQLHVETDKGIILVDDTMEIYKELING
Ga0208086_10040536	F004366	N/A	MNSLQAIIDHIEQFYNNHLQVKKVGSDFKEQLFNFATKDEKYPIVFIVPVTVNPADNTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYVYFTYSNDYSFDVIGTPNFQPLNNDLLDYAAGYVMNITLTVNDWTNCAVPLQ