Basic Information | |
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Taxon OID | 3300020510 Open in IMG/M |
Scaffold ID | Ga0208086_1004053 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3196 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004366 | Metagenome / Metatranscriptome | 441 | Y |
F016965 | Metagenome / Metatranscriptome | 243 | Y |
F033725 | Metagenome / Metatranscriptome | 176 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208086_10040531 | F033725 | N/A | MITILNREIPNQLEELTIEQFEAITDINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVKEFNSAERKEYPTVEELEIDGYIYKAQMKLTVRDTKLIEKITLKKEKGYISEMLAVMFKREDLTPTEHYTDAHIKQKAKLIRKLNAAISIPYVMFIAQKIGQQANDQATAELEPSNA |
Ga0208086_10040534 | F016965 | N/A | MFSINGIEYTITGPIEVISDTQLHVETDKGIILVDDTMEIYKELING |
Ga0208086_10040536 | F004366 | N/A | MNSLQAIIDHIEQFYNNHLQVKKVGSDFKEQLFNFATKDEKYPIVFIVPVTVNPADNTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYVYFTYSNDYSFDVIGTPNFQPLNNDLLDYAAGYVMNITLTVNDWTNCAVPLQ |
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