Scaffold Ga0208697_1006532

Overview

Basic Information

• Taxon OID: 3300020507
• Scaffold ID: Ga0208697_1006532
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1620
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F010534	Metagenome / Metatranscriptome	302	N
F014823	Metagenome / Metatranscriptome	259	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208697_10065322	F014823	N/A	MSKKSNKSKEGTPILIDYSLYREMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLMSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIENLQPIAVAEEKIDLPESLEVL
Ga0208697_10065323	F007918	AGAAG	MCDTTLEESDPFLNLELDIEAGINQELSSIKQELLSILTKVETLTEAMNRVILKEEGRREQFKILCSSIDYLFGENIGMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVATKPDLESMKTEMEKVLSQQRIEKFQTNPQQEERRPQKG
Ga0208697_10065324	F010534	AGAAGG	MSDKVGEKQEAIMNLIDQQIKEALKDQASRLEILQDRIKDAIDISTTEHSQGIKQVMLFVTKAHVQAWITSLKHKVDTAGDCEICDLEKILGEESLEIAEAIKVALSNRNEETRNRILGELLEKTITKIEALSVRVSPAPQP