Scaffold Ga0208697_1002411

Overview

Basic Information

• Taxon OID: 3300020507
• Scaffold ID: Ga0208697_1002411
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2849
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y
F084821	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208697_10024117	F084821	GGAGG	MTWLDLYNYLYERANDIKNPGSFPWQDNVEVWDWETLDYYPTDVVQNPSDNKISLSVDTYQQPEITK
Ga0208697_10024118	F007110	GGAGG	MNCIYCKNCVGIDRYEFLVETGRKIICKDCSVENRAVGFMDWGHKTAPSLVLVPSNATETIRKLDRANRRAR
Ga0208697_10024119	F007305	N/A	KTIRKAYQNWTPTRQIRCYHYSAAFDGTKLIAFTQNNPIKTHTGAYRIGEDFNLPKYKEFPYYHSESRLISQLLDRYNTVDPNWTICVLRINRKGLILGSKPCENCSKLLSAVGLNDIYYSTDDGNFSDSFGNLTTVNELTMPMVMV